To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ExpressionAtlas")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.
Author: Maria Keays
Maintainer: Maria Keays <mkeays at ebi.ac.uk>
Citation (from within R,
enter citation("ExpressionAtlas")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ExpressionAtlas")
HTML | R Script | ExpressionAtlas |
Reference Manual | ||
Text | NEWS |
biocViews | ArrayExpress, ExperimentData, ExpressionData, MicroarrayData, SequencingData, Software |
Version | 1.0.3 |
In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
License | GPL (>= 3) |
Depends | R (>= 3.2.0), methods, Biobase, SummarizedExperiment, limma, S4Vectors, xml2 |
Imports | utils, XML, httr |
LinkingTo | |
Suggests | knitr, testthat, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | ExpressionAtlas_1.0.3.tar.gz |
Windows Binary | ExpressionAtlas_1.0.3.zip |
Mac OS X 10.9 (Mavericks) | ExpressionAtlas_1.0.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/ExpressionAtlas/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/ExpressionAtlas/ |
Package Downloads Report | Download Stats |
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