To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DESeq")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution
Author: Simon Anders, EMBL Heidelberg <sanders at fs.tum.de>
Maintainer: Simon Anders <sanders at fs.tum.de>
Citation (from within R,
enter citation("DESeq")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DESeq")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DESeq")
R Script | Analysing RNA-Seq data with the "DESeq" package | |
Reference Manual | ||
Text | NEWS |
biocViews | ChIPSeq, DifferentialExpression, RNASeq, SAGE, Sequencing, Software |
Version | 1.24.0 |
In Bioconductor since | BioC 2.6 (R-2.11) (6.5 years) |
License | GPL (>= 3) |
Depends | BiocGenerics(>= 0.7.5), Biobase(>= 2.21.7), locfit, lattice |
Imports | genefilter, geneplotter, methods, MASS, RColorBrewer |
LinkingTo | |
Suggests | pasilla(>= 0.2.10), vsn, gplots |
SystemRequirements | |
Enhances | |
URL | http://www-huber.embl.de/users/anders/DESeq |
Depends On Me | DBChIP, EDDA, metaseqR, Polyfit, SeqGSEA, TCC, tRanslatome |
Imports Me | ampliQueso, ArrayExpressHTS, easyRNASeq, EDASeq, EDDA, gCMAP, HTSFilter, rnaSeqMap, ToPASeq |
Suggests Me | BitSeq, compcodeR, DESeq2, dexus, DiffBind, ELBOW, gage, genefilter, IHW, IHW, IHWpaper, oneChannelGUI, pasilla, PROPER, regionReport, SSPA, XBSeq |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | DESeq_1.24.0.tar.gz |
Windows Binary | DESeq_1.24.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | DESeq_1.24.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/DESeq/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/DESeq/ |
Package Downloads Report | Download Stats |
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