To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CellNOptR")
In most cases, you don't need to download the package archive at all.
|
|
|
|
|
|
|
![]() ![]() |
Bioconductor version: Release (3.3)
This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.
Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve
Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>
Citation (from within R,
enter citation("CellNOptR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CellNOptR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CellNOptR")
R Script | Main vignette:Playing with networks using CellNOptR | |
Reference Manual | ||
Text | NEWS |
biocViews | CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse |
Version | 1.18.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (5 years) |
License | GPL-3 |
Depends | R (>= 2.15.0), RBGL, graph, methods, hash, ggplot2, RCurl, Rgraphviz, XML |
Imports | |
LinkingTo | |
Suggests | RUnit, BiocGenerics, igraph |
SystemRequirements | Graphviz version >= 2.2 |
Enhances | |
URL | |
Depends On Me | CNORdt, CNORfeeder, CNORfuzzy, CNORode |
Imports Me | |
Suggests Me | MEIGOR |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | CellNOptR_1.18.0.tar.gz |
Windows Binary | CellNOptR_1.18.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | CellNOptR_1.18.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/CellNOptR/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/CellNOptR/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: