To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CGHcall")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
Author: Mark van de Wiel, Sjoerd Vosse
Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>
Citation (from within R,
enter citation("CGHcall")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CGHcall")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CGHcall")
R Script | CGHcall | |
Reference Manual |
biocViews | Microarray, Preprocessing, Software, Visualization |
Version | 2.34.1 |
In Bioconductor since | BioC 2.1 (R-2.6) (9 years) |
License | GPL (http://www.gnu.org/copyleft/gpl.html) |
Depends | R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | CGHnormaliter, focalCall, GeneBreak |
Imports Me | CGHnormaliter, QDNAseq |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | CGHcall_2.34.1.tar.gz |
Windows Binary | CGHcall_2.34.1.zip |
Mac OS X 10.9 (Mavericks) | CGHcall_2.34.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/CGHcall/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/CGHcall/ |
Package Downloads Report | Download Stats |
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