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| sscu-package | Strength of Selected Codon Usage |
| genomic_gc3 | genomic gc3 for an multifasta genomic file |
| optimal_codons | statistical table for the optimal codons |
| optimal_codons_table | statistical table for the optimal codons |
| optimal_index | optimal codons index for the four and six codon boxes |
| selected_codons | statistical table for the optimal codons |
| s_index | S index (Strength of Selected Codon Usage) |