Grey Lists - Mask Artefact Regions Based on ChIP Inputs

Documentation for package ‘GreyListChIP’ version 1.4.1

calcThreshold	Calculate Read Count Threshold
calcThreshold-method	Calculate Read Count Threshold
countReads	Count reads from a 'BamFile'
countReads-method	Count reads from a 'BamFile'
export-method	'"GreyList"' Objects
getKaryotype	Replace the karyotype of a 'GreyList' object
getKaryotype-method	Replace the karyotype of a 'GreyList' object
gl	A sample 'GreyList' object for use in examples.
GreyList	'"GreyList"' Objects
greyList	A sample 'GreyList' object for use in examples.
GreyList-class	'"GreyList"' Objects
greyListBS	Construct a grey list with default arguments
initialize-method	'"GreyList"' Objects
loadKaryotype	Load a karyotype from a file
loadKaryotype-method	Load a karyotype from a file
makeGreyList	Generate a grey list from a 'GreyList' object
makeGreyList-method	Generate a grey list from a 'GreyList' object
show-method	'"GreyList"' Objects