Mass Spectrometry Data on ExperimentHub

---

Documentation for package ‘MsDataHub’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

20171016_POOL_POS_1_105-134.mzML	AB Sciex LC-MS data files
20171016_POOL_POS_3_105-134.mzML	AB Sciex LC-MS data files
Ai2025	Ai et al (2025) single-cell data
Ai2025_aCMs_report.tsv	Ai et al (2025) single-cell data
Ai2025_iCMs_report.tsv	Ai et al (2025) single-cell data
benchmarkingDIA	DIA benchmarking data
benchmarkingDIA.tsv	DIA benchmarking data
cdf	MS data in CDF format
contaminatants	Contaminant and cRAP databases
cptac	CPTAC label-free data
cptac_a_b_c_peptides.txt	CPTAC label-free data
cptac_a_b_peptides.txt	CPTAC label-free data
cptac_peptides.txt	CPTAC label-free data
cRAP	Contaminant and cRAP databases
crap	Contaminant and cRAP databases
crap_ccp.fasta	Contaminant and cRAP databases
crap_gpm.fasta	Contaminant and cRAP databases
crap_maxquant.fasta.gz	Contaminant and cRAP databases
ko15.CDF	MS data in CDF format
MsDataHub	All MsDataHub datasets
PestMix1_DDA.mzML	Triple TOF SWATH Data
PestMix1_SWATH.mzML	Triple TOF SWATH Data
PXD000001	PXD000001 Proteomics Data
Report.Derks2022.plexDIA	Derks 2022 plexDIA data
Report.Derks2022.plexDIA.tsv	Derks 2022 plexDIA data
sciex	AB Sciex LC-MS data files
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzid	PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML.gz	PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.20141210.mzid	PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.20141210.mzML.gz	PXD000001 Proteomics Data
TripleTOF	Triple TOF SWATH Data
X20171016_POOL_POS_1_105.134.mzML	AB Sciex LC-MS data files
X20171016_POOL_POS_3_105.134.mzML	AB Sciex LC-MS data files