To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("sapFinder")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: 3.2
sapFinder is developed to automate (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics.
Author: Shaohang Xu, Bo Wen
Maintainer: Shaohang Xu <xsh.skye at gmail.com>, Bo Wen <wenbo at genomics.cn>
Citation (from within R,
enter citation("sapFinder")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("sapFinder")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sapFinder")
sapFinder Vignette | ||
Reference Manual | ||
Text | NEWS |
biocViews | MassSpectrometry, Proteomics, RNASeq, ReportWriting, SNP, Software, Visualization |
Version | 1.8.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
License | GPL-2 |
Depends | R (>= 3.0.0), rTANDEM(>= 1.3.5) |
Imports | pheatmap, Rcpp (>= 0.10.6), graphics, grDevices, stats, utils |
LinkingTo | Rcpp |
Suggests | RUnit, BiocGenerics, BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | sapFinder_1.8.0.tar.gz |
Windows Binary | sapFinder_1.8.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | sapFinder_1.8.0.tgz |
Mac OS X 10.9 (Mavericks) | sapFinder_1.8.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/sapFinder/tree/release-3.2 |
Package Short Url | http://bioconductor.org/packages/sapFinder/ |
Package Downloads Report | Download Stats |
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