To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TRONCO")

In most cases, you don't need to download the package archive at all.

TRONCO

   

TRONCO, an R package for TRanslational ONCOlogy

Bioconductor version: 3.2

TRONCO is an R package for the inference of cancer progression models from heterogeneous genomic data.

Author: Marco Antoniotti [cph], Giulio Caravagna [aut, cre], Luca De Sano [aut], Alex Graudenzi [aut], Ilya Korsunsky [cph], Mattia Longoni [ctb], Loes Olde Loohuis [cph], Giancarlo Mauri [cph], Bud Mishra [cph], Daniele Ramazzotti [aut]

Maintainer: BIMIB Group <tronco at disco.unimib.it>

Citation (from within R, enter citation("TRONCO")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TRONCO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TRONCO")

 

PDF An R Package for TRanslational ONCOlogy
PDF   Reference Manual
Text   NEWS

Details

biocViews Cancer, Software
Version 2.2.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL (>= 3.0)
Depends R (>= 3.1), doParallel, bnlearn
Imports Rgraphviz, ggplot2, RColorBrewer, reshape2, cgdsr, igraph, grid, gridExtra, xtable, gtable, scales
LinkingTo
Suggests BiocGenerics, BiocStyle, testthat, R.matlab
SystemRequirements
Enhances
URL https://sites.google.com/site/troncopackage/
BugReports https://github.com/BIMIB-DISCo/TRONCO
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TRONCO_2.2.0.tar.gz
Windows Binary TRONCO_2.2.0.zip
Mac OS X 10.6 (Snow Leopard) TRONCO_2.2.0.tgz
Mac OS X 10.9 (Mavericks) TRONCO_2.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/TRONCO/tree/release-3.2
Package Short Url http://bioconductor.org/packages/TRONCO/
Package Downloads Report Download Stats

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