To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DiffBind")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: 3.2
Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
Author: Rory Stark<rory.stark at cruk.cam.ac.uk>, Gord Brown <gdbzork at gmail.com>
Maintainer: Rory Stark<rory.stark at cruk.cam.ac.uk>
Citation (from within R,
enter citation("DiffBind")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DiffBind")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DiffBind")
DiffBind: Differential binding analysis of ChIP-Seq peak data | ||
Reference Manual | ||
Text | NEWS |
biocViews | ChIPSeq, DifferentialPeakCalling, Sequencing, Software |
Version | 1.16.3 |
In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2.2), GenomicRanges, SummarizedExperiment, limma, GenomicAlignments, locfit |
Imports | RColorBrewer, amap, edgeR, gplots, grDevices, stats, utils, IRanges, zlibbioc, lattice, systemPipeR, tools |
LinkingTo | Rsamtools(>= 1.19.38) |
Suggests | DESeq, Rsamtools, DESeq2, BiocStyle |
SystemRequirements | |
Enhances | rgl, parallel, BiocParallel, XLConnect |
URL | |
Depends On Me | ChIPQC, MMDiff |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | DiffBind_1.16.3.tar.gz |
Windows Binary | DiffBind_1.16.3.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | DiffBind_1.16.0.tgz |
Mac OS X 10.9 (Mavericks) | DiffBind_1.16.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/DiffBind/tree/release-3.2 |
Package Short Url | http://bioconductor.org/packages/DiffBind/ |
Package Downloads Report | Download Stats |
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