To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DNABarcodes")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: 3.2
The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.
Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
Citation (from within R,
enter citation("DNABarcodes")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DNABarcodes")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNABarcodes")
HTML | DNABarcodes | |
Reference Manual | ||
Text | NEWS |
biocViews | Preprocessing, Sequencing, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
License | GPL-2 |
Depends | Matrix, parallel |
Imports | Rcpp (>= 0.11.2), BH |
LinkingTo | Rcpp, BH |
Suggests | knitr, BiocStyle, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | DNABarcodes_1.0.0.tar.gz |
Windows Binary | DNABarcodes_1.0.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | DNABarcodes_1.0.0.tgz |
Mac OS X 10.9 (Mavericks) | DNABarcodes_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/DNABarcodes/tree/release-3.2 |
Package Short Url | http://bioconductor.org/packages/DNABarcodes/ |
Package Downloads Report | Download Stats |
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