peakPantheR 1.18.0
Package: peakPantheR
Authors: Arnaud Wolfer
Package for Peak Picking and ANnoTation of High resolution Experiments in R,
implemented in R
and Shiny
peakPantheR
implements functions to detect, integrate and report pre-defined
features in MS files (e.g. compounds, fragments, adducts, …).
It is designed for:
multiple
compounds in one
file at a timemultiple
compounds in multiple
files in parallel
, store
results in a single
objectpeakPantheR
can process LC/MS data files in NetCDF, mzML/mzXML and
mzData format as data import is achieved using Bioconductor’s
mzR package.
To install peakPantheR
from Bioconductor:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("peakPantheR")
Install the development version of peakPantheR
directly from GitHub with:
# Install devtools
if(!require("devtools")) install.packages("devtools")
devtools::install_github("phenomecentre/peakPantheR")
To get started peakPantheR
’s graphical user interface
implements all the functions to detect and integrate multiple compounds in
multiple files in parallel and store results in a single object. It
can be employed to integrate a large number of expected features across a
dataset:
library(peakPantheR)
peakPantheR_start_GUI(browser = TRUE)
# To exit press ESC in the command line