The gDRtestData package is intended to store and generate example data that can be used through gDR.
All key functions can be found in gDRcore/R/generate_wrappers.R. In inst/scripts you can find a script generate_example_data.R showing how to generate and process testing data.
The function installAllDeps assists in installing package dependencies.
sessionInfo()## R version 4.3.1 (2023-06-16)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 22.04.3 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.18-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] gDRtestData_1.0.0 BiocStyle_2.30.0
##
## loaded via a namespace (and not attached):
## [1] digest_0.6.33 R6_2.5.1 bookdown_0.36
## [4] fastmap_1.1.1 xfun_0.40 cachem_1.0.8
## [7] knitr_1.44 htmltools_0.5.6.1 rmarkdown_2.25
## [10] cli_3.6.1 sass_0.4.7 jquerylib_0.1.4
## [13] compiler_4.3.1 tools_4.3.1 evaluate_0.22
## [16] bslib_0.5.1 yaml_2.3.7 BiocManager_1.30.22
## [19] jsonlite_1.8.7 rlang_1.1.1