Introduction

Supporting data package for the EpiMix package. The package includes:

  1. CpG annotation for miRNAs and lncRNAs.

  2. Toy datasets for demonstration purpose of the main EpiMix packages.

  3. Methods to retrieve lncRNA expression data of the TCGA project from ExperimentHub

Session Info

sessionInfo()
#> R version 4.3.1 (2023-06-16)
#> Platform: x86_64-pc-linux-gnu (64-bit)
#> Running under: Ubuntu 22.04.3 LTS
#> 
#> Matrix products: default
#> BLAS:   /home/biocbuild/bbs-3.18-bioc/R/lib/libRblas.so 
#> LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
#> 
#> locale:
#>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
#>  [3] LC_TIME=en_GB              LC_COLLATE=C              
#>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
#>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
#>  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
#> 
#> time zone: America/New_York
#> tzcode source: system (glibc)
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> loaded via a namespace (and not attached):
#>  [1] digest_0.6.33     R6_2.5.1          fastmap_1.1.1     xfun_0.40        
#>  [5] cachem_1.0.8      knitr_1.44        htmltools_0.5.6.1 rmarkdown_2.25   
#>  [9] cli_3.6.1         sass_0.4.7        jquerylib_0.1.4   compiler_4.3.1   
#> [13] tools_4.3.1       evaluate_0.22     bslib_0.5.1       yaml_2.3.7       
#> [17] rlang_1.1.1       jsonlite_1.8.7