## ---- echo = FALSE, eval = TRUE, results = 'hide', message = FALSE, warning = FALSE---- library(knitr) ## ---- echo = TRUE, eval = TRUE, results = 'hide', message = FALSE, warning = FALSE---- library(SBGNview.data) library(SummarizedExperiment) data("IFNg","cancer.ds") head(assays(IFNg)$counts) IFNg$group ## ---- echo = TRUE, eval = TRUE, results = 'hide', message = FALSE, warning = FALSE---- head(assays(cancer.ds)$counts) ## ---- echo = TRUE, eval = TRUE, results = 'hide', message = FALSE, warning = FALSE---- # hsa ID <=> glyph ID data(hsa_ENTREZID_pathwayCommons) head(hsa_ENTREZID_pathwayCommons) ## ---- echo = TRUE, eval = TRUE, results = 'hide', message = FALSE, warning = FALSE---- data(mmu_KO_ENTREZID) # mmu ID <=> KO head(mmu_KO_ENTREZID) data(hsa_KO_ENTREZID) # hsa ID <=> KO head(hsa_KO_ENTREZID) ## ---- echo = TRUE, eval = TRUE, results = 'hide', message = FALSE, warning = FALSE---- # Compound ID: chebi data(chebi_pathwayCommons) head(chebi_pathwayCommons) data(chebi_pathway.id) head(chebi_pathway.id)