DOI: 10.18129/B9.bioc.microbiomeDataSets  

Experiment Hub based microbiome datasets

Bioconductor version: Release (3.17)

microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.

Author: Leo Lahti [cre, aut] , Felix G.M. Ernst [aut] , Sudarshan Shetty [aut] , Chouaib Benchraka [ctb] , Yagmur Simsek [ctb]

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("microbiomeDataSets")):


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biocViews ExperimentData, ExperimentHub, MicrobiomeData, SequencingData
Version 1.8.0
License CC0
Depends R (>= 4.1), SummarizedExperiment, TreeSummarizedExperiment, MultiAssayExperiment
Imports methods, utils, BiocGenerics, ExperimentHub, Biostrings, ape
Suggests knitr, rmarkdown, BiocStyle, SingleCellExperiment, testthat
Depends On Me
Imports Me
Suggests Me mia, miaViz
Links To Me
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Source Package microbiomeDataSets_1.8.0.tar.gz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/microbiomeDataSets
Package Short Url https://bioconductor.org/packages/microbiomeDataSets/
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