Bioconductor version: Release (3.17)
Provides access to BAM files generated from RNA-seq data produced with different levels of gDNA contamination. It currently allows one to download a subset of the data published by Li et al., BMC Genomics, 23:554, 2022. This subset of data is formed by BAM files with about 100,000 alignments with three different levels of gDNA contamination.
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R,
enter citation("gDNAinRNAseqData")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("gDNAinRNAseqData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDNAinRNAseqData")
HTML | R Script | RNA-seq data with different levels of gDNA contamination |
Reference Manual | ||
Text | NEWS |
biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData |
Version | 1.0.0 |
License | Artistic-2.0 |
Depends | R (>= 4.3) |
Imports | RCurl, XML, ExperimentHub, BiocGenerics, Rsamtools |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/functionalgenomics/gDNAinRNAseqData |
BugReports | https://github.com/functionalgenomics/gDNAinRNAseqData |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | gDNAinRNAseqData_1.0.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/gDNAinRNAseqData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDNAinRNAseqData |
Package Short Url | https://bioconductor.org/packages/gDNAinRNAseqData/ |
Package Downloads Report | Download Stats |
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