Bioconductor version: Release (3.17)
fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R,
enter citation("fourDNData")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("fourDNData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fourDNData")
HTML | R Script | fourDNData |
Reference Manual | ||
Text | LICENSE |
biocViews | ExperimentData, SequencingData |
Version | 1.0.0 |
License | MIT + file LICENSE |
Depends | R (>= 4.2) |
Imports | BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools |
LinkingTo | |
Suggests | rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/js2264/fourDNData |
BugReports | https://github.com/js2264/fourDNData/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | fourDNData_1.0.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/fourDNData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/fourDNData |
Package Short Url | https://bioconductor.org/packages/fourDNData/ |
Package Downloads Report | Download Stats |
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