BioMartGOGeneSets

DOI: 10.18129/B9.bioc.BioMartGOGeneSets  

Gene Ontology Gene Sets from BioMart

Bioconductor version: Release (3.17)

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("BioMartGOGeneSets")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioMartGOGeneSets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMartGOGeneSets")

 

HTML R Script BioMart Gene Ontology Gene Sets Collections
HTML R Script Pre-compiled GO Gene Sets
HTML R Script Retrieve GO Gene Sets from BioMart
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews AnnotationData, Organism
Version 0.99.10
License MIT + file LICENSE
Depends R (>= 4.0.0)
Imports utils, S4Vectors, GenomicRanges
LinkingTo
Suggests biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT
SystemRequirements
Enhances
URL https://github.com/jokergoo/BioMartGOGeneSets
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioMartGOGeneSets_0.99.10.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BioMartGOGeneSets/
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