tweeDEseq

DOI: 10.18129/B9.bioc.tweeDEseq  

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: Release (3.17)

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Dolors Pelegri-Siso [aut, cre] , Juan R. Gonzalez [aut] , Mikel Esnaola [aut], Robert Castelo [aut]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")

 

PDF R Script tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF   Reference Manual

Details

biocViews DNASeq, DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.46.2
In Bioconductor since BioC 2.9 (R-2.14) (12 years)
License GPL (>= 2)
Depends R (>= 4.3.0)
Imports Rcpp (>= 1.0.10), MASS, limma, edgeR, parallel, cqn, grDevices, graphics, stats, utils
LinkingTo Rcpp
Suggests tweeDEseqCountData, xtable
SystemRequirements
Enhances
URL https://github.com/isglobal-brge/tweeDEseq/
BugReports https://github.com/isglobal-brge/tweeDEseq/issues
Depends On Me
Imports Me ptmixed
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tweeDEseq_1.46.2.tar.gz
Windows Binary tweeDEseq_1.46.2.zip (64-bit only)
macOS Binary (x86_64) tweeDEseq_1.46.2.tgz
macOS Binary (arm64) tweeDEseq_1.46.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/tweeDEseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tweeDEseq
Bioc Package Browser https://code.bioconductor.org/browse/tweeDEseq/
Package Short Url https://bioconductor.org/packages/tweeDEseq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive

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