DOI: 10.18129/B9.bioc.terraTCGAdata    

This is the development version of terraTCGAdata; for the stable release version, see terraTCGAdata.

OpenAccess TCGA Data on Terra as MultiAssayExperiment

Bioconductor version: Development (3.17)

Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.

Author: Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramosperez at roswellpark.org>

Citation (from within R, enter citation("terraTCGAdata")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews DataImport, Infrastructure, Software
Version 1.3.0
In Bioconductor since BioC 3.15 (R-4.2) (0.5 years)
License Artistic-2.0
Depends R (>= 4.2.0), AnVIL, MultiAssayExperiment
Imports BiocFileCache, dplyr, GenomicRanges, methods, RaggedExperiment, readr, S4Vectors, stats, tidyr, TCGAutils, utils
Suggests knitr, rmarkdown, BiocStyle, withr, testthat (>= 3.0.0)
URL https://github.com/waldronlab/terraTCGAdata
BugReports https://github.com/waldronlab/terraTCGAdata/issues
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Source Repository git clone https://git.bioconductor.org/packages/terraTCGAdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/terraTCGAdata
Package Short Url https://bioconductor.org/packages/terraTCGAdata/
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