shinyMethyl

DOI: 10.18129/B9.bioc.shinyMethyl  

Interactive visualization for Illumina methylation arrays

Bioconductor version: Release (3.17)

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shinyMethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")

 

HTML	R Script	shinyMethyl: interactive visualization of Illumina 450K methylation arrays
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.36.1
In Bioconductor since	BioC 3.0 (R-3.1) (9 years)
License	Artistic-2.0
Depends
Imports	Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils
LinkingTo
Suggests	shinyMethylData, minfiData, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL	https://github.com/Jfortin1/shinyMethyl
BugReports	https://github.com/Jfortin1/shinyMethyl
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	shinyMethyl_1.36.1.tar.gz
Windows Binary	shinyMethyl_1.36.1.zip
macOS Binary (x86_64)	shinyMethyl_1.36.1.tgz
macOS Binary (arm64)	shinyMethyl_1.36.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/shinyMethyl
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/shinyMethyl
Bioc Package Browser	https://code.bioconductor.org/browse/shinyMethyl/
Package Short Url	https://bioconductor.org/packages/shinyMethyl/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive