DOI: 10.18129/B9.bioc.scoreInvHap    

This is the development version of scoreInvHap; for the stable release version, see scoreInvHap.

Get inversion status in predefined regions

Bioconductor version: Development (3.17)

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.

Author: Carlos Ruiz [aut], Dolors Pelegrí [aut], Juan R. Gonzalez [aut, cre]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at>

Citation (from within R, enter citation("scoreInvHap")):


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# The following initializes usage of Bioc devel


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HTML R Script Inversion genotyping with scoreInvHap
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biocViews Genetics, GenomicVariation, SNP, Software
Version 1.21.0
In Bioconductor since BioC 3.6 (R-3.4) (5 years)
License file LICENSE
Depends R (>= 3.6.0)
Imports Biostrings, methods, snpStats, VariantAnnotation, GenomicRanges, BiocParallel, graphics, SummarizedExperiment
Suggests testthat, knitr, BiocStyle, rmarkdown
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