rpx

DOI: 10.18129/B9.bioc.rpx    

This is the development version of rpx; for the stable release version, see rpx.

R Interface to the ProteomeXchange Repository

Bioconductor version: Development (3.17)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")

 

HTML	R Script	An R interface to the ProteomeXchange repository
PDF		Reference Manual

Details

biocViews	DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version	2.7.0
In Bioconductor since	BioC 2.14 (R-3.1) (8.5 years)
License	GPL-2
Depends	methods
Imports	BiocFileCache, jsonlite, xml2, RCurl, curl, utils
LinkingTo
Suggests	Biostrings, BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/lgatto/rpx
BugReports	https://github.com/lgatto/rpx/issues
Depends On Me
Imports Me
Suggests Me	MsExperiment, MSnbase, PSMatch, RforProteomics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rpx_2.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rpx
Package Short Url	https://bioconductor.org/packages/rpx/
Package Downloads Report	Download Stats