rBiopaxParser

DOI: 10.18129/B9.bioc.rBiopaxParser  

Parses BioPax files and represents them in R

Bioconductor version: Release (3.17)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rBiopaxParser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

 

PDF	R Script	rBiopaxParser Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, Software
Version	2.40.0
In Bioconductor since	BioC 2.12 (R-3.0) (10.5 years)
License	GPL (>= 2)
Depends	R (>= 4.0), data.table
Imports	XML
LinkingTo
Suggests	Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
SystemRequirements
Enhances
URL	https://github.com/frankkramer-lab/rBiopaxParser
Depends On Me
Imports Me	pwOmics
Suggests Me	AnnotationHub, NetPathMiner
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rBiopaxParser_2.40.0.tar.gz
Windows Binary	rBiopaxParser_2.40.0.zip (64-bit only)
macOS Binary (x86_64)	rBiopaxParser_2.40.0.tgz
macOS Binary (arm64)	rBiopaxParser_2.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rBiopaxParser
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rBiopaxParser
Bioc Package Browser	https://code.bioconductor.org/browse/rBiopaxParser/
Package Short Url	https://bioconductor.org/packages/rBiopaxParser/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive