DOI: 10.18129/B9.bioc.polyester  

Simulate RNA-seq reads

Bioconductor version: Release (3.17)

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek

Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>

Citation (from within R, enter citation("polyester")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script The Polyester package for simulating RNA-seq reads
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biocViews DifferentialExpression, Sequencing, Software
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc
Suggests knitr, ballgown, markdown
Depends On Me
Imports Me
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Follow Installation instructions to use this package in your R session.

Source Package polyester_1.36.0.tar.gz
Windows Binary polyester_1.36.0.zip
macOS Binary (x86_64) polyester_1.36.0.tgz
macOS Binary (arm64) polyester_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/polyester
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/polyester
Bioc Package Browser https://code.bioconductor.org/browse/polyester/
Package Short Url https://bioconductor.org/packages/polyester/
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Old Source Packages for BioC 3.17 Source Archive

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