oligoClasses

DOI: 10.18129/B9.bioc.oligoClasses    

This is the development version of oligoClasses; for the stable release version, see oligoClasses.

Classes for high-throughput arrays supported by oligo and crlmm

Bioconductor version: Development (3.17)

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Author: Benilton Carvalho and Robert Scharpf

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com> and Robert Scharpf <rscharpf at jhsph.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("oligoClasses")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Infrastructure, Software
Version	1.61.0
In Bioconductor since	BioC 2.1 (R-2.6) (15 years)
License	GPL (>= 2)
Depends	R (>= 2.14)
Imports	BiocGenerics(>= 0.27.1), Biobase(>= 2.17.8), methods, graphics, IRanges(>= 2.5.17), GenomicRanges(>= 1.23.7), SummarizedExperiment, Biostrings(>= 2.23.6), affyio(>= 1.23.2), foreach, BiocManager, utils, S4Vectors(>= 0.9.25), RSQLite, DBI, ff
LinkingTo
Suggests	hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6), RUnit, human370v1cCrlmm, VanillaICE, crlmm
SystemRequirements
Enhances	doMC, doMPI, doSNOW, doParallel, doRedis
URL
Depends On Me	cn.farms, crlmm, maEndToEnd, mBPCR, oligo, pd.atdschip.tiling, puma
Imports Me	affycoretools, frma, ITALICS, mimager, MinimumDistance, pdInfoBuilder, puma, VanillaICE
Suggests Me	hapmapsnp6
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	oligoClasses_1.61.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/oligoClasses
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/oligoClasses
Package Short Url	https://bioconductor.org/packages/oligoClasses/
Package Downloads Report	Download Stats