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This is the development version of oligoClasses; for the stable release version, see oligoClasses.
Bioconductor version: Development (3.17)
This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com> and Robert Scharpf <rscharpf at jhsph.edu>
Citation (from within R,
enter citation("oligoClasses")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("oligoClasses")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | Infrastructure, Software |
Version | 1.61.0 |
In Bioconductor since | BioC 2.1 (R-2.6) (15 years) |
License | GPL (>= 2) |
Depends | R (>= 2.14) |
Imports | BiocGenerics(>= 0.27.1), Biobase(>= 2.17.8), methods, graphics, IRanges(>= 2.5.17), GenomicRanges(>= 1.23.7), SummarizedExperiment, Biostrings(>= 2.23.6), affyio(>= 1.23.2), foreach, BiocManager, utils, S4Vectors(>= 0.9.25), RSQLite, DBI, ff |
LinkingTo | |
Suggests | hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6), RUnit, human370v1cCrlmm, VanillaICE, crlmm |
SystemRequirements | |
Enhances | doMC, doMPI, doSNOW, doParallel, doRedis |
URL | |
Depends On Me | cn.farms, crlmm, maEndToEnd, mBPCR, oligo, pd.atdschip.tiling, puma |
Imports Me | affycoretools, frma, ITALICS, mimager, MinimumDistance, pdInfoBuilder, puma, VanillaICE |
Suggests Me | hapmapsnp6 |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | oligoClasses_1.61.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/oligoClasses |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/oligoClasses |
Package Short Url | https://bioconductor.org/packages/oligoClasses/ |
Package Downloads Report | Download Stats |
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