netboost

DOI: 10.18129/B9.bioc.netboost    

This is the development version of netboost; for the stable release version, see netboost.

Network Analysis Supported by Boosting

Bioconductor version: Development (3.17)

Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.

Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]

Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>

Citation (from within R, enter citation("netboost")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("netboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics
Version 2.7.0
In Bioconductor since BioC 3.9 (R-3.6) (3.5 years)
License GPL-3
Depends R (>= 4.0.0)
Imports Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, R.utils
LinkingTo Rcpp, RcppParallel
Suggests knitr, markdown, rmarkdown
SystemRequirements GNU make, Bash, Perl, Gzip
Enhances
URL https://bioconductor.org/packages/release/bioc/html/netboost.html
BugReports https://github.com/PascalSchlosser/netboost/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/netboost
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netboost
Package Short Url https://bioconductor.org/packages/netboost/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: