DOI: 10.18129/B9.bioc.ndexr    

This is the development version of ndexr; for the stable release version, see ndexr.

NDEx R client library

Bioconductor version: Development (3.17)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer <florian.auer at informatik.uni-augsburg.de>, Frank Kramer <frank.kramer at informatik.uni-augsburg.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script NDExR Vignette
PDF   Reference Manual


biocViews DataImport, Network, Pathways, Software
Version 1.21.0
In Bioconductor since BioC 3.6 (R-3.4) (5 years)
License BSD_3_clause
Depends RCX
Imports httr, jsonlite, plyr, tidyr
Suggests BiocStyle, testthat, knitr, rmarkdown
URL https://github.com/frankkramer-lab/ndexr
BugReports https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me netgsa
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.21.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ndexr
Package Short Url https://bioconductor.org/packages/ndexr/
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