DOI: 10.18129/B9.bioc.miRcomp    

This is the development version of miRcomp; for the stable release version, see miRcomp.

Tools to assess and compare miRNA expression estimatation methods

Bioconductor version: Development (3.17)

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

Author: Matthew N. McCall <mccallm at gmail.com>, Lauren Kemperman <lkemperm at u.rochester.edu>

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("miRcomp")):


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HTML R Script Assessment and comparison of miRNA expression estimation methods (miRcomp)
PDF   Reference Manual


biocViews Preprocessing, QualityControl, Software, qPCR
Version 1.29.0
In Bioconductor since BioC 3.2 (R-3.2) (7 years)
License GPL-3 | file LICENSE
Depends R (>= 3.2), Biobase(>= 2.22.0), miRcompData
Imports utils, methods, graphics, KernSmooth, stats
Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny
Depends On Me
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Source Package miRcomp_1.29.0.tar.gz
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Source Repository git clone https://git.bioconductor.org/packages/miRcomp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRcomp
Package Short Url https://bioconductor.org/packages/miRcomp/
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