methInheritSim

DOI: 10.18129/B9.bioc.methInheritSim    

This is the development version of methInheritSim; for the stable release version, see methInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Development (3.17)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")

 

HTML	R Script	Simulating Whole-Genome Inherited Bisulphite Sequencing Data
PDF		Reference Manual

Details

biocViews	BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version	1.21.0
In Bioconductor since	BioC 3.6 (R-3.4) (5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
SystemRequirements
Enhances
URL	https://github.com/belleau/methInheritSim
BugReports	https://github.com/belleau/methInheritSim/issues
Depends On Me
Imports Me
Suggests Me	methylInheritance
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methInheritSim_1.21.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methInheritSim
Package Short Url	https://bioconductor.org/packages/methInheritSim/
Package Downloads Report	Download Stats