logitT

DOI: 10.18129/B9.bioc.logitT  

logit-t Package

Bioconductor version: Release (3.17)

The logitT library implements the Logit-t algorithm introduced in --A high performance test of differential gene expression for oligonucleotide arrays-- by William J Lemon, Sandya Liyanarachchi and Ming You for use with Affymetrix data stored in an AffyBatch object in R.

Author: Tobias Guennel <tguennel at vcu.edu>

Maintainer: Tobias Guennel <tguennel at vcu.edu>

Citation (from within R, enter citation("logitT")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("logitT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logitT")

 

PDF R Script logitT primer
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, Software
Version 1.58.0
In Bioconductor since BioC 2.3 (R-2.8) (15 years)
License GPL (>= 2)
Depends affy
Imports
LinkingTo
Suggests SpikeInSubset
SystemRequirements
Enhances
URL http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package logitT_1.58.0.tar.gz
Windows Binary logitT_1.58.0.zip
macOS Binary (x86_64) logitT_1.58.0.tgz
macOS Binary (arm64) logitT_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/logitT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/logitT
Bioc Package Browser https://code.bioconductor.org/browse/logitT/
Package Short Url https://bioconductor.org/packages/logitT/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive

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