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DOI: 10.18129/B9.bioc.idpr  

Profiling and Analyzing Intrinsically Disordered Proteins in R

Bioconductor version: Release (3.17)

‘idpr’ aims to integrate tools for the computational analysis of intrinsically disordered proteins (IDPs) within R. This package is used to identify known characteristics of IDPs for a sequence of interest with easily reported and dynamic results. Additionally, this package includes tools for IDP-based sequence analysis to be used in conjunction with other R packages. Described in McFadden WM & Yanowitz JL (2022). "idpr: A package for profiling and analyzing Intrinsically Disordered Proteins in R." PloS one, 17(4), e0266929. .

Author: William M. McFadden [cre, aut], Judith L. Yanowitz [aut, fnd], Michael Buszczak [ctb, fnd]

Maintainer: William M. McFadden <wmm27 at pitt.edu>

Citation (from within R, enter citation("idpr")):


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HTML R Script Charge and Hydropathy Vignette
HTML R Script Disordered Matrices Vignette
HTML R Script idpr Package Overview Vignette
HTML R Script IUPred Vignette
HTML R Script Sequence Map Vignette
HTML R Script Structural Tendency Vignette
PDF   Reference Manual


biocViews CellBiology, Proteomics, Software, StructuralPrediction
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License LGPL (>= 3)
Depends R (>= 4.1.0)
Imports ggplot2 (>= 3.3.0), magrittr (>= 1.5), dplyr (>= 0.8.5), plyr (>= 1.8.6), jsonlite (>= 1.6.1), rlang (>= 0.4.6), Biostrings(>= 2.56.0), methods (>= 4.0.0)
Suggests knitr, rmarkdown, msa, ape, testthat, seqinr
BugReports https://github.com/wmm27/idpr/issues
Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package idpr_1.10.0.tar.gz
Windows Binary idpr_1.10.0.zip
macOS Binary (x86_64) idpr_1.10.0.tgz
macOS Binary (arm64) idpr_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/idpr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/idpr
Bioc Package Browser https://code.bioconductor.org/browse/idpr/
Package Short Url https://bioconductor.org/packages/idpr/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive

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