iASeq

DOI: 10.18129/B9.bioc.iASeq  

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: Release (3.17)

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

Citation (from within R, enter citation("iASeq")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iASeq")

 

PDF R Script iASeq Vignette
PDF   Reference Manual

Details

biocViews ChIPSeq, ImmunoOncology, RNASeq, SNP, Software
Version 1.44.0
In Bioconductor since BioC 2.10 (R-2.15) (11.5 years)
License GPL-2
Depends R (>= 2.14.1)
Imports graphics, grDevices
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iASeq_1.44.0.tar.gz
Windows Binary iASeq_1.44.0.zip
macOS Binary (x86_64) iASeq_1.44.0.tgz
macOS Binary (arm64) iASeq_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iASeq
Bioc Package Browser https://code.bioconductor.org/browse/iASeq/
Package Short Url https://bioconductor.org/packages/iASeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: