globalSeq

DOI: 10.18129/B9.bioc.globalSeq    

This is the development version of globalSeq; for the stable release version, see globalSeq.

Global Test for Counts

Bioconductor version: Development (3.17)

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.

Author: Armin Rauschenberger [aut, cre]

Maintainer: Armin Rauschenberger <armin.rauschenberger at uni.lu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("globalSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globalSeq")

 

HTML		article frame
HTML		vignette frame
PDF	R Script	vignette source
PDF		Reference Manual

Details

biocViews	DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA
Version	1.27.0
In Bioconductor since	BioC 3.3 (R-3.3) (6.5 years)
License	GPL-3
Depends	R (>= 3.0.0)
Imports
LinkingTo
Suggests	knitr, testthat, SummarizedExperiment, S4Vectors
SystemRequirements
Enhances
URL	https://github.com/rauschenberger/globalSeq
BugReports	https://github.com/rauschenberger/globalSeq/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	globalSeq_1.27.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/globalSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/globalSeq
Package Short Url	https://bioconductor.org/packages/globalSeq/
Package Downloads Report	Download Stats