DOI: 10.18129/B9.bioc.ggmanh    

This is the development version of ggmanh; for the stable release version, see ggmanh.

Visualization Tool for GWAS Result

Bioconductor version: Development (3.17)

Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.

Author: John Lee [aut, cre], Xiuwen Zheng [ctb, dtc]

Maintainer: John Lee <john.lee at>

Citation (from within R, enter citation("ggmanh")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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HTML R Script Guide to ggmanh Package
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biocViews Genetics, GenomeWideAssociation, Software, Visualization
Version 1.3.0
In Bioconductor since BioC 3.15 (R-4.2) (0.5 years)
License MIT + file LICENSE
Depends methods, ggplot2
Imports gdsfmt, ggrepel, grDevices, RColorBrewer, rlang, scales, SeqArray(>= 1.32.0), stats
Suggests BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), markdown, GenomicRanges
Depends On Me
Imports Me
Suggests Me SAIGEgds
Links To Me
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