flowStats

DOI: 10.18129/B9.bioc.flowStats  

Statistical methods for the analysis of flow cytometry data

Bioconductor version: Release (3.17)

Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.

Author: Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee

Maintainer: Greg Finak <greg at ozette.com>, Mike Jiang <mike at ozette.com>

Citation (from within R, enter citation("flowStats")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowStats")

 

PDF R Script flowStats Overview
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version 4.12.0
In Bioconductor since BioC 2.4 (R-2.9) (14.5 years)
License Artistic-2.0
Depends R (>= 3.0.2)
Imports BiocGenerics, MASS, flowCore(>= 1.99.6), flowWorkspace, ncdfFlow(>= 2.19.5), flowViz, fda (>= 2.2.6), Biobase, methods, grDevices, graphics, stats, cluster, utils, KernSmooth, lattice, ks, RColorBrewer, rrcov, corpcor, mnormt
LinkingTo
Suggests xtable, testthat, openCyto, ggcyto, ggridges
SystemRequirements
Enhances RBGL, graph
URL http://www.github.com/RGLab/flowStats
BugReports http://www.github.com/RGLab/flowStats/issues
Depends On Me flowVS, highthroughputassays
Imports Me
Suggests Me cydar, flowClust, flowCore, flowTime, flowViz, ggcyto, ncdfFlow, openCyto
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowStats_4.12.0.tar.gz
Windows Binary flowStats_4.12.0.zip
macOS Binary (x86_64) flowStats_4.12.0.tgz
macOS Binary (arm64) flowStats_4.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowStats
Bioc Package Browser https://code.bioconductor.org/browse/flowStats/
Package Short Url https://bioconductor.org/packages/flowStats/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: