erccdashboard

DOI: 10.18129/B9.bioc.erccdashboard    

This is the development version of erccdashboard; for the stable release version, see erccdashboard.

Assess Differential Gene Expression Experiments with ERCC Controls

Bioconductor version: Development (3.17)

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Author: Sarah Munro, Steve Lund

Maintainer: Sarah Munro <sarah.munro at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("erccdashboard")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("erccdashboard")

 

PDF	R Script	erccdashboard examples
PDF		Reference Manual

Details

biocViews	AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray
Version	1.33.0
In Bioconductor since	BioC 3.0 (R-3.1) (8 years)
License	GPL (>=2)
Depends	R (>= 3.2), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0)
Imports	edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/munrosa/erccdashboard http://tinyurl.com/erccsrm
BugReports	https://github.com/munrosa/erccdashboard/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	erccdashboard_1.33.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/erccdashboard
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/erccdashboard
Package Short Url	https://bioconductor.org/packages/erccdashboard/
Package Downloads Report	Download Stats