DOI: 10.18129/B9.bioc.deltaCaptureC    

This is the development version of deltaCaptureC; for the stable release version, see deltaCaptureC.

This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Bioconductor version: Development (3.17)

This package discovers meso-scale chromatin remodelling from 3C data. 3C data is local in nature. It givens interaction counts between restriction enzyme digestion fragments and a preferred 'viewpoint' region. By binning this data and using permutation testing, this package can test whether there are statistically significant changes in the interaction counts between the data from two cell types or two treatments.

Author: Michael Shapiro [aut, cre]

Maintainer: Michael Shapiro <michael.shapiro at>

Citation (from within R, enter citation("deltaCaptureC")):


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biocViews BiologicalQuestion, Software, StatisticalMethod
Version 1.13.0
In Bioconductor since BioC 3.10 (R-3.6) (3 years)
License MIT + file LICENSE
Depends R (>= 3.6)
Imports IRanges, GenomicRanges, SummarizedExperiment, ggplot2, DESeq2, tictoc
Suggests knitr, rmarkdown
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