DOI: 10.18129/B9.bioc.coRdon  

Codon Usage Analysis and Prediction of Gene Expressivity

Bioconductor version: Release (3.17)

Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.

Author: Anamaria Elek [cre, aut], Maja Kuzman [aut], Kristian Vlahovicek [aut]

Maintainer: Anamaria Elek <anamariaelek at>

Citation (from within R, enter citation("coRdon")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script coRdon
PDF   Reference Manual
Text   NEWS


biocViews BiomedicalInformatics, GeneExpression, GenePrediction, GeneSetEnrichment, Genetics CellBiology, ImmunoOncology, KEGG, Metagenomics, Pathways, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports methods, stats, utils, Biostrings, Biobase, dplyr, stringr, purrr, ggplot2, data.table
Suggests BiocStyle, testthat, knitr, rmarkdown
Depends On Me
Imports Me vhcub
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package coRdon_1.18.0.tar.gz
Windows Binary
macOS Binary (x86_64) coRdon_1.18.0.tgz
macOS Binary (arm64) coRdon_1.18.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: