cellxgenedp

DOI: 10.18129/B9.bioc.cellxgenedp    

This is the development version of cellxgenedp; for the stable release version, see cellxgenedp.

Discover and Access Single Cell Data Sets in the cellxgene Data Portal

Bioconductor version: Development (3.17)

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cellxgenedp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellxgenedp")

 

HTML	R Script	Discover and download datasets and files from the cellxgene data portal
PDF		Reference Manual

Details

biocViews	DataImport, SingleCell, Software, ThirdPartyClient
Version	1.3.0
In Bioconductor since	BioC 3.15 (R-4.2) (0.5 years)
License	Artistic-2.0
Depends	dplyr
Imports	httr, curl, jsonlite, utils, tools, shiny, DT, rjsoncons
LinkingTo
Suggests	zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cellxgenedp_1.3.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/cellxgenedp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cellxgenedp
Package Short Url	https://bioconductor.org/packages/cellxgenedp/
Package Downloads Report	Download Stats