DOI: 10.18129/B9.bioc.barcodetrackR    

This is the development version of barcodetrackR; for the stable release version, see barcodetrackR.

Functions for Analyzing Cellular Barcoding Data

Bioconductor version: Development (3.17)

barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data. Data required is samples and tag abundances in matrix form. Usually from cellular barcoding experiments, integration site retrieval analyses, or similar technologies.

Author: Diego Alexander Espinoza [aut, cre], Ryland Mortlock [aut]

Maintainer: Diego Alexander Espinoza <diego.espinoza at>

Citation (from within R, enter citation("barcodetrackR")):


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if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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biocViews Sequencing, Software, Visualization
Version 1.7.0
In Bioconductor since BioC 3.13 (R-4.1) (1.5 years)
License file LICENSE
Depends R (>= 4.1)
Imports cowplot, circlize, dplyr, ggplot2, ggdendro, ggridges, graphics, grDevices, magrittr, plyr, proxy, RColorBrewer, rlang, scales, shiny, stats, SummarizedExperiment, S4Vectors, tibble, tidyr, vegan, viridis, utils
Suggests BiocStyle, knitr, magick, rmarkdown, testthat
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