DOI: 10.18129/B9.bioc.banocc    

This is the development version of banocc; for the stable release version, see banocc.

Bayesian ANalysis Of Compositional Covariance

Bioconductor version: Development (3.17)

BAnOCC is a package designed for compositional data, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with `rstan`. It provides as output the `stanfit` object as well as posterior median and credible interval estimates for each correlation element.

Author: Emma Schwager [aut, cre], Curtis Huttenhower [aut]

Maintainer: George Weingart <george.weingart at>, Curtis Huttenhower <chuttenh at>

Citation (from within R, enter citation("banocc")):


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biocViews Bayesian, ImmunoOncology, Metagenomics, Software
Version 1.23.0
In Bioconductor since BioC 3.5 (R-3.4) (5.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.1), rstan (>= 2.17.4)
Imports coda (>= 0.18.1), mvtnorm, stringr
Suggests knitr, rmarkdown, methods, testthat, BiocStyle
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