DOI: 10.18129/B9.bioc.alevinQC    

This is the development version of alevinQC; for the stable release version, see alevinQC.

Generate QC Reports For Alevin Output

Bioconductor version: Development (3.17)

Generate QC reports summarizing the output from an alevin run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] , Avi Srivastava [aut], Rob Patro [aut], Dongze He [aut]

Maintainer: Charlotte Soneson <charlottesoneson at>

Citation (from within R, enter citation("alevinQC")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script alevinQC
PDF   Reference Manual


biocViews QualityControl, SingleCell, Software
Version 1.15.0
In Bioconductor since BioC 3.9 (R-3.6) (3.5 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports rmarkdown (>= 2.5), tools, methods, ggplot2, GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.17.4), cowplot, rlang, Rcpp
LinkingTo Rcpp
Suggests knitr, BiocStyle, testthat (>= 3.0.0), BiocManager
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alevinQC_1.15.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: