DOI: 10.18129/B9.bioc.Rbwa    

This is the development version of Rbwa; for the stable release version, see Rbwa.

R wrapper for BWA-backtrack and BWA-MEM aligners

Bioconductor version: Development (3.17)

Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("Rbwa")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script An introduction to Rbwa
PDF   Reference Manual


biocViews Alignment, Sequencing, Software
Version 1.3.0
In Bioconductor since BioC 3.15 (R-4.2) (0.5 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Suggests testthat, BiocStyle, knitr, rmarkdown
SystemRequirements GNU make
URL https://github.com/Jfortin1/Rbwa
BugReports https://github.com/Jfortin1/Rbwa/issues
Depends On Me
Imports Me crisprBwa
Suggests Me crisprDesign
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbwa_1.3.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Rbwa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rbwa
Package Short Url https://bioconductor.org/packages/Rbwa/
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