PepsNMR

DOI: 10.18129/B9.bioc.PepsNMR    

This is the development version of PepsNMR; for the stable release version, see PepsNMR.

Pre-process 1H-NMR FID signals

Bioconductor version: Development (3.17)

This package provides R functions for common pre-procssing steps that are applied on 1H-NMR data. It also provides a function to read the FID signals directly in the Bruker format.

Author: Manon Martin [aut, cre], Bernadette Govaerts [aut, ths], Benoît Legat [aut], Paul H.C. Eilers [aut], Pascal de Tullio [dtc], Bruno Boulanger [ctb], Julien Vanwinsberghe [ctb]

Maintainer: Manon Martin <manon.martin at uclouvain.be>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PepsNMR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PepsNMR")

 

HTML	R Script	Application of PepsNMR on the Human Serum dataset
PDF		Reference Manual

Details

biocViews	DataImport, Metabolomics, Preprocessing, Software, Visualization
Version	1.17.0
In Bioconductor since	BioC 3.8 (R-3.5) (4 years)
License	GPL-2 | file LICENSE
Depends	R (>= 3.6)
Imports	Matrix, ptw, ggplot2, gridExtra, matrixStats, reshape2, methods, graphics, stats
LinkingTo
Suggests	knitr, markdown, rmarkdown, BiocStyle, PepsNMRData
SystemRequirements
Enhances
URL	https://github.com/ManonMartin/PepsNMR
BugReports	https://github.com/ManonMartin/PepsNMR/issues
Depends On Me
Imports Me	ASICS
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PepsNMR_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/PepsNMR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PepsNMR
Package Short Url	https://bioconductor.org/packages/PepsNMR/
Package Downloads Report	Download Stats