MultimodalExperiment

DOI: 10.18129/B9.bioc.MultimodalExperiment  

Integrative Bulk and Single-Cell Experiment Container

Bioconductor version: Release (3.17)

MultimodalExperiment is an S4 class that integrates bulk and single-cell experiment data; it is optimally storage-efficient, and its methods are exceptionally fast. It effortlessly represents multimodal data of any nature and features normalized experiment, subject, sample, and cell annotations, which are related to underlying biological experiments through maps. Its coordination methods are opt-in and employ database-like join operations internally to deliver fast and flexible management of multimodal data.

Author: Lucas Schiffer [aut, cre]

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("MultimodalExperiment")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultimodalExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultimodalExperiment")

 

HTML R Script MultimodalExperiment
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, SingleCell, Software
Version 1.0.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3.0), IRanges, S4Vectors
Imports BiocGenerics, MultiAssayExperiment, methods, utils
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultimodalExperiment_1.0.0.tar.gz
Windows Binary MultimodalExperiment_1.0.0.zip
macOS Binary (x86_64) MultimodalExperiment_1.0.0.tgz
macOS Binary (arm64) MultimodalExperiment_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultimodalExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultimodalExperiment
Bioc Package Browser https://code.bioconductor.org/browse/MultimodalExperiment/
Package Short Url https://bioconductor.org/packages/MultimodalExperiment/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive

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