DOI: 10.18129/B9.bioc.MsBackendRawFileReader  

Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

Bioconductor version: Release (3.17)

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut] , Roger Gine Bertomeu [ctb]

Maintainer: Christian Panse <cp at>

Citation (from within R, enter citation("MsBackendRawFileReader")):


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HTML R Script On Using and Extending the `MsBackendRawFileReader` Backend.
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biocViews MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.6.0
In Bioconductor since BioC 3.14 (R-4.1) (2 years)
License GPL-3
Depends R (>= 4.1), methods, Spectra(>= 1.5.8)
Imports MsCoreUtils, S4Vectors, IRanges, rawrr(>= 1.7.4), utils, BiocParallel
Suggests BiocStyle(>= 2.5), ExperimentHub, MsBackendMgf, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
SystemRequirements mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
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Source Package MsBackendRawFileReader_1.6.0.tar.gz
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