MOGAMUN

DOI: 10.18129/B9.bioc.MOGAMUN    

This is the development version of MOGAMUN; for the stable release version, see MOGAMUN.

MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks

Bioconductor version: Development (3.17)

MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.

Author: Elva-María Novoa-del-Toro [aut, cre]

Maintainer: Elva-María Novoa-del-Toro <elvanov at hotmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MOGAMUN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOGAMUN")

 

HTML	R Script	Finding active modules with MOGAMUN
PDF		Reference Manual

Details

biocViews	BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics
Version	1.9.0
In Bioconductor since	BioC 3.12 (R-4.0) (2 years)
License	GPL-3 + file LICENSE
Depends
Imports	stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph
LinkingTo
Suggests	knitr, markdown
SystemRequirements
Enhances
URL	https://github.com/elvanov/MOGAMUN
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MOGAMUN_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MOGAMUN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MOGAMUN
Package Short Url	https://bioconductor.org/packages/MOGAMUN/
Package Downloads Report	Download Stats