DOI: 10.18129/B9.bioc.GenomAutomorphism  

Compute the automorphisms between DNA's Abelian group representations

Bioconductor version: Release (3.17)

This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.

Author: Robersy Sanchez [aut, cre]

Maintainer: Robersy Sanchez <genomicmath at>

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biocViews ComparativeGenomics, FunctionalGenomics, MathematicalBiology, MultipleSequenceAlignment, Software
Version 1.2.0
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License Artistic-2.0
Depends R (>= 4.2)
Imports Biostrings, BiocGenerics, BiocParallel, GenomeInfoDb, GenomicRanges, IRanges, dplyr, data.table, parallel, doParallel, foreach, methods, S4Vectors, stats, numbers, utils
Suggests spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr
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